[PR #20] [MERGED] Revert 5.4 deviations, added config file, adde CLI argument to run ETL only on specific query #78

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opened 2026-03-23 20:28:55 +00:00 by mirror · 0 comments

mirror commented

2026-03-23 20:28:55 +00:00

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📋 Pull Request Information

Original PR: https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/pull/20
Author: @pjlammertyn
Created: 11/13/2023
Status: ✅ Merged
Merged: 11/13/2023
Merged by: @pjlammertyn

Base: main ← Head: revert-5.4-deviations

📝 Commits (5)

276d96d reverted deviations from cdm 5.4
9298a31 added better templates for the ETL queries and the Usagi source queries
66d9691 added option to run only a specific ETL query
39334b3 updated reamde
340674f updated readme

📊 Changes

72 files changed (+1193 additions, -1536 deletions)

View changed files

📝 .gitignore (+1 -0)
📝 .vscode/launch.json (+12 -13)
📝 Pipfile.lock (+37 -37)
📝 README.md (+63 -78)
📝 pyproject.toml (+4 -1)
📝 src/riab/__init__.py (+2 -2)
📝 src/riab/cli.py (+428 -451)
📝 src/riab/etl/__init__.py (+1 -1)
📝 src/riab/etl/achilles.py (+19 -72)
📝 src/riab/etl/bigquery/__init__.py (+1 -1)
📝 src/riab/etl/bigquery/bigquery_cleanup.py (+24 -45)
➕ src/riab/etl/bigquery/bigquery_create_cdm_folders.py (+45 -0)
➖ src/riab/etl/bigquery/bigquery_create_etl_folders.py (+0 -30)
📝 src/riab/etl/bigquery/bigquery_create_omop_db.py (+95 -14)
📝 src/riab/etl/bigquery/bigquery_data_quality.py (+6 -17)
📝 src/riab/etl/bigquery/bigquery_data_quality_dashboard.py (+6 -28)
📝 src/riab/etl/bigquery/bigquery_etl.py (+79 -175)
📝 src/riab/etl/bigquery/bigquery_etl_base.py (+53 -116)
📝 src/riab/etl/bigquery/bigquery_import_vocabularies.py (+13 -36)
📝 src/riab/etl/bigquery/gcp.py (+30 -95)

...and 52 more files

📄 Description

No description provided

_{🔄 This issue represents a GitHub Pull Request. It cannot be merged through Gitea due to API limitations.}

## 📋 Pull Request Information **Original PR:** https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/pull/20 **Author:** [@pjlammertyn](https://github.com/pjlammertyn) **Created:** 11/13/2023 **Status:** ✅ Merged **Merged:** 11/13/2023 **Merged by:** [@pjlammertyn](https://github.com/pjlammertyn) **Base:** `main` ← **Head:** `revert-5.4-deviations` --- ### 📝 Commits (5) - [`276d96d`](https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/commit/276d96d22f19fbf733b0873de897bdb992975f40) reverted deviations from cdm 5.4 - [`9298a31`](https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/commit/9298a3168c3fdeaa77dc9bf99f26534fa80f8ca7) added better templates for the ETL queries and the Usagi source queries - [`66d9691`](https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/commit/66d96910ea03fe324b5549c0c6a4c7b8edf20ff0) added option to run only a specific ETL query - [`39334b3`](https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/commit/39334b377eb676f3332cc60ab28225075a238ec7) updated reamde - [`340674f`](https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/commit/340674fe6c99a55cb949ceef87e152e64c5412fc) updated readme ### 📊 Changes **72 files changed** (+1193 additions, -1536 deletions) <details> <summary>View changed files</summary> 📝 `.gitignore` (+1 -0) 📝 `.vscode/launch.json` (+12 -13) 📝 `Pipfile.lock` (+37 -37) 📝 `README.md` (+63 -78) 📝 `pyproject.toml` (+4 -1) 📝 `src/riab/__init__.py` (+2 -2) 📝 `src/riab/cli.py` (+428 -451) 📝 `src/riab/etl/__init__.py` (+1 -1) 📝 `src/riab/etl/achilles.py` (+19 -72) 📝 `src/riab/etl/bigquery/__init__.py` (+1 -1) 📝 `src/riab/etl/bigquery/bigquery_cleanup.py` (+24 -45) ➕ `src/riab/etl/bigquery/bigquery_create_cdm_folders.py` (+45 -0) ➖ `src/riab/etl/bigquery/bigquery_create_etl_folders.py` (+0 -30) 📝 `src/riab/etl/bigquery/bigquery_create_omop_db.py` (+95 -14) 📝 `src/riab/etl/bigquery/bigquery_data_quality.py` (+6 -17) 📝 `src/riab/etl/bigquery/bigquery_data_quality_dashboard.py` (+6 -28) 📝 `src/riab/etl/bigquery/bigquery_etl.py` (+79 -175) 📝 `src/riab/etl/bigquery/bigquery_etl_base.py` (+53 -116) 📝 `src/riab/etl/bigquery/bigquery_import_vocabularies.py` (+13 -36) 📝 `src/riab/etl/bigquery/gcp.py` (+30 -95) _...and 52 more files_ </details> ### 📄 Description _No description provided_ --- <sub>🔄 This issue represents a GitHub Pull Request. It cannot be merged through Gitea due to API limitations.</sub>